Coral reefs

Bonaire has long been considered to have amongst the healthiest reefs of the Caribbean. However, at the 2002 Annual Meeting of Pew Fellows for Marine Conservation in Bonaire, several scientists with a long history of research on Bonaire’s coral reefs, expressed concern over the future of the island’s reefs. Specifically, they identified the decline in large predatory fish such as groupers as a noticeable change during the past decade. They suspected that this change resulted from increased fishing pressure on Bonaire’s reefs. They also suggested the Bonaire authorities take action to protect the reef-fish stocks. In response to those concerns, officials of the Bonaire Marine Park consulted with scientists and fishermen on Bonaire to explore the possibility of establishing fish protected areas (FPAs), as a way to protect the reef fish stocks. If FPAs improve both fish stocks and the condition of the coral reef, all stakeholders will profit. If fish stocks increased significantly in FPAs, a “spill over” of these fish to adjacent fished areas would be expected. Also, fish that perform important ecological functions could improve the quality of the coral reef ecosystem. Therefore, areas protected from fishing should have healthier coral reefs, which would also improve the island’s valuable ecotourism businesses. The Pew Fellows program funded a research project designed to identify potential FPAs. The Bonaire Marine Park authority, in consultation with the local fishing community would determine the location and size of the FPAs. To monitor the effects of fish protection areas so fishing impacts can be isolated from other factors (such as natural changes, shore-based impacts or effects of scuba divers), an equal number of similar reef sites were selected for study, with half closed to fishing while half remaining open (as “control” reefs). This report reviews the status and recent trends of coral reefs in the Caribbean and Bonaire. It identifies the key features of healthy reefs and how Bonaire’s reefs compares with those elsewhere in the Caribbean. The seven chapters go into scientific detail on factors contributing to the condition of Bonaire’s reefs as of March and April 2003. Special focus will be on factors that threaten reef health or are critical to reef resilience such as seaweed overgrowth, nutrient inputs from land and the ecology of juvenile corals. The report concludes with chapters on the socioeconomic effects of Bonaire’s coral reefs on the fishing and diving industries that depend on them.
Summary Results 2003: The Biological Status of the Coral Reefs of Bonaire & Socioeconomic Implications
 In March and April of 2003, teams of researchers studied the coral reefs of Bonaire to establish the baseline conditions that currently exist and against which trends can be determined and future changes from fish protection areas be assessed. Six study sites were chosen with advice from the Bonaire Marine Park. They represent a range of comparable reefs minimally affected by the 1999 Hurricane Lenny. The sites selected for this study were: Windsock, Plaza, Forest on Klein Bonaire, Scientifico, Barcadera and Karpata (Fig. 0.4). When feasible, parallel studies were conducted at 5 and 10 m depths, however, only the latter depth had fully developed reefs at all sites. The study was designed to quantify the patterns of abundance of the dominant reef organisms as well as to study the processes that control their abundances or threaten their stability. This was done to establish a baseline and to determine if significant differences exist among any of the study sites that would make them a poor choice as a FPA. We also examined some socioeconomic factors related to fishing and scuba diving activities if FPAs are established in Bonaire.

Coral reefs throughout the Caribbean have suffered the effects of human activities, including overfishing, nutrient pollution, and global climate change. Yet despite systematic deterioration of reef health, there still exists appreciable variability of reef conditions across Caribbean sites. The mid-depth (20 m) fringing reefs of Bonaire and Curaçao, in the leeward Netherlands Antilles, remain healthier than reefs on many other Caribbean islands, supporting relatively high fish biomass and high coral cover. Approximately one half of the fish biomass is composed of planktivorous species, with the balance comprised of herbivorous and carnivorous species. Only a small fraction (<7%) of the fish biomass is composed of apex predators, predominantly due to the essential absence of sharks from these reefs. Coral cover across these islands averages 26.6%, with fleshy macroalgae and turf algae covering most of the remaining benthos. Coral cover was not correlated with the biomass of any fish groups, failing to provide a clear link between fish activities (e.g., herbivory) and the health and persistence of corals. However, there was a strong, positive correlation between macroalgal cover and herbivorous fish biomass. This result is in contrast to previously published reports and may identify a disparity between correlational studies conducted within islands (or nearby islands) versus studies comparing results from across islands. These data provide insights into the structure of reef communities in the southern Caribbean Sea.

Abstract

Coral cover on Caribbean reefs has declined rapidly since the early 1980's. Diseases have been a major driver, decimating communities of framework building Acropora and Orbicella coral species, and reportedly leading to the emergence of novel coral assemblages often dominated by domed and plating species of the genera Agaricia, Porites and Siderastrea. These corals were not historically important Caribbean framework builders, and typically have much smaller stature and lower calcification rates, fuelling concerns over reef carbonate production and growth potential. Using data from 75 reefs from across the Caribbean we quantify: (i) the magnitude of non-framework building coral dominance throughout the region and (ii) the contribution of these corals to contemporary carbonate production. Our data show that live coral cover averages 18.2% across our sites and coral carbonate production 4.1 kg CaCO3 m−2 yr−1. However, non-framework building coral species dominate and are major carbonate producers at a high proportion of sites; they are more abundant than Acropora and Orbicella at 73% of sites; contribute an average 68% of the carbonate produced; and produce more than half the carbonate at 79% of sites. Coral cover and carbonate production rate are strongly correlated but, as relative abundance of non-framework building corals increases, average carbonate production rates decline. Consequently, the use of coral cover as a predictor of carbonate budget status, without species level production rate data, needs to be treated with caution. Our findings provide compelling evidence for the Caribbean-wide dominance of non-framework building coral taxa, and that these species are now major regional carbonate producers. However, because these species typically have lower calcification rates, continued transitions to states dominated by non-framework building coral species will further reduce carbonate production rates below ‘predecline’ levels, resulting in shifts towards negative carbonate budget states and reducing reef growth potential.

The rainbow parrotfish Scarus guacamaia has an obligate dependence on man- groves at juvenile stages, and, as the largest herbivorous fish in the Caribbean region, its distribution has important implications for coral reefs. The effect of connectivity with mangroves on relative density, biomass and size of S. guacamaia was assessed from over 65 km of visual sur- veys from Bonaire, Caribbean Netherlands. In addition, an individual-based, age-structured, mechanistic model (IBM) was developed to explain dispersal patterns from nurseries for S. guaca- maia. In the IBM, mortality was constant, growth was determined by a von Bertalanffy growth equation, and movement was modeled through a random walk process. Using the IBM, simula- tions were run to generate patterns of density, biomass, and size with distance from nurseries. Rainbow parrotfish were observed as far as 42 km away from the nearest mangroves on Bonaire. Relative density and biomass showed significant exponential declines with distance from the pri- mary mangrove nursery and were significantly higher in high versus low complexity non-man- grove habitats. Mean size increased linearly with distance (r2 = 0.74), reflecting an absence of smaller individuals with greater distance. These results were closely mirrored by the simulation study: density and biomass declined exponentially with distance from nurseries, and size and age increased following saturating functions. The results suggest that mangroves may have the poten- tial to supply individuals much further than previously thought. Both the empirical and simulation studies reaffirm calls to prioritise protection of reef habitats close to nurseries as well as the nurseries themselves. 

Although reef corals are dependent of the di- noflagellate Symbiodinium, the large majority of corals spawn gametes that do not contain their vital symbiont. This suggests the existence of a pool of Symbiodinium in the environment, of which surprisingly little is known. Reefs around Curac ̧ao (Caribbean) were sampled for free- living Symbiodinium at three time periods (summer 2009, summer 2010, and winter 2010) to characterize different habitats (water column, coral rubble, sediment, the macroalgae Halimeda spp., Dictyota spp., and Lobophora variegata, and the seagrass Thalassia testudinum) that could serve as environmental sources of symbionts for corals. We detected the common clades of Symbiodinium that engage in symbiosis with Caribbean coral hosts A, B, and C using Symbiodinium-specific primers of the hyper- variable region of the chloroplast 23S ribosomal DNA gene. We also discovered clade G and, for the first time in the Caribbean, the presence of free-living Symbiodinium clades F and H. Additionally, this study expands the habitat range of free-living Symbiodinium as environmental Symbiodinium was detected in T. testudinum seagrass beds. The patterns of association between free-living Symbio- dinium types and habitats were shown to be complex. An interesting, strong association was seen between some clade A sequence types and sediment, suggesting that sediment could be a niche where clade A radiated from a free-living ancestor. Other interesting relationships were seen between sequence types of Symbiodinium clade C with Halimeda spp. and clades B and F with T. testudinium. These relationships highlight the importance of some macroalgae and seagrasses in hosting free-living Symbio- dinium. Finally, studies spanning beyond a 1-yr cycle are needed to further expand on our results in order to better understand the variation of Symbiodinium in the environ- ment through time. All together, results presented here showed that the great diversity of free-living Symbiodinium has a dynamic distribution across habitats and time. 

Bonaire’s coral reefs remain among the healthiest in the Caribbean. Although the island’s reefs have suffered bleaching disturbances similar to those plaguing reefs throughout the Caribbean, they uniquely show signs of recovery. Here we highlight key findings from our March 2015 biennial coral reef monitoring expedition. We put the findings in the context of both the trends recorded since 2003 when we began our regular monitoring and the most recent research related to the factors controlling the structure and functioning of healthy coral reef ecosystems. 

Abstract Distribution and abundance of coral diseases have been well documented, but only a few studies con- sidered diseases affecting crustose coralline algae (CCA), particularly at the species level. We investigated the spa- tiotemporal dynamics of diseases affecting CCA along the south coast of Curac ̧ao, southern Caribbean. Two syn- dromes were detected: the Coralline White Band Syndrome (CWBS) previously described and the Coralline White Patch Disease (CWPD) reported here for the first time. Diseases were present at all six study sites, and our results did not reveal a relationship between disease occurrence and human influence. Both diseases were more prevalent on the shallower reef flat than on the deeper reef slope, and during the warm/rainy season than during the cold/dry season. The patterns observed were consistent with a positive link between temperature and disease occurrence. Reef flat communities were dominated by Neogoniolithon mamillare and Paragoniolithon solubile, whereas deeper habitats were dominated by Hydrolithon boergesenii. Dis- eases affected all the species encountered, and no prefer- able host was detected. There was a significant relationship between both disease occurrences and CCA cover. Moni- toring of affected patches revealed that 90 % of lesions in CWBS increased in size, whereas 88 % of CWPD lesions regenerated over time. CWBS linear progression rate did not vary between seasons or species and ranged from 0.15 to 0.36 cm month-1, which is in the same order of mag- nitude as rates previously documented. We conclude that diseases have the potential to cause major loss in CCA cover, particularly in shallow waters. As CCA play a key role in reef ecosystems, our study suggests that the emer- gence of diseases affecting these algae may pose a real threat to coral reef ecosystems. The levels of disease reported here will provide a much-needed local baseline allowing future comparisons. 

Bathymetric distributions of photosynthetic marine invertebrate species are relatively well studied, however the importance of symbiont zonation (i.e. hosting of distinct algal endosymbiont communities over depth) in determining these depth distributions still remains unclear. Here, we assess the prevalence of symbiont zonation in tropical scleractinian corals by genotyping the Symbiodinium of the 25 most common species over a large depth range (down to 60 m) on a Caribbean reef. Symbiont depth zonation was found to be common on a reef-wide scale (11 out of 25 coral species), and a dominant feature in species with the widest depth distributions. With regards to reproductive strategy, symbiont zonation was more common in broadcasting species, which also exhibited a higher level of polymorphism in the symbiont zonation (i.e. number of different Symbiodinium profiles involved). Species with symbiont zonation exhibited significantly broader depth distributions than those without, highlighting the role of symbiont zonation in shaping the vertical distributions of the coral host. Overall, the results demonstrate that coral reefs can consist of highly structured communities over depth when considering both the coral host and their obligate photosymbionts, which probably has strong implications for the extent of connectivity between shallow and mesophotic habitats. 

Background

The Caribbean pillar coral Dendrogyra cylindrus was recently listed as a threatened species under the United States Endangered Species Act. One of the major threats to this species is its low, virtually undetectable recruitment rate. To our knowledge, sexually-produced recruits have never been found in over 30 years of surveys of Caribbean reefs. Until recently, the reproductive behavior of D. cylindrus was uncharacterized, limiting efforts to study its early life history, identify population bottlenecks, and conduct outplanting projects with sexually-produced offspring. In Curaçao, we observed the spawning behavior of this species over three years and five lunar cycles. We collected gametes from spawning individuals on three occasions and attempted to rear larvae and primary polyp settlers. 

Consumer-mediated indirect effects at the community level are difficult to demonstrate empirically. Here, we show an explicit indirect effect of overfishing on competition between sponges and reef-building corals from surveys of 69 sites across the Caribbean. Leveraging the large-scale, long-term removal of sponge predators, we selected overfished sites where intensive methods, primarily fish-trapping, have been employed for decades or more, and compared them to sites in remote or marine protected areas (MPAs) with variable levels of enforcement. Sponge-eating fishes (angelfishes and parrotfishes) were counted at each site, and the benthos surveyed, with coral colonies scored for interaction with sponges. Overfished sites had >3 fold more overgrowth of corals by sponges, and mean coral contact with sponges was 25.6%, compared with 12.0% at less-fished sites. Greater contact with corals by sponges at overfished sites was mostly by sponge species palatable to sponge preda- tors. Palatable species have faster rates of growth or reproduction than defended sponge species, which instead make metabolically expensive chemical defenses. These results validate the top-down conceptual model of sponge community ecology for Caribbean reefs, as well as provide an unambiguous justification for MPAs to protect threatened reef-building corals.

An unanticipated outcome of the benthic survey component of this study
was that overfished sites had lower mean macroalgal cover (23.1% vs. 38.1% for less-fished sites), a result that is contrary to prevailing assumptions about seaweed control by herbivorous fishes. Because we did not quantify herbivores for this study, we interpret this result with caution, but suggest that additional large-scale studies comparing intensively overfished and MPA sites are warranted to examine the relative impacts of herbivorous fishes and urchins on Caribbean reefs.